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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16568205_16569221_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16568205 - 16569221
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTTAGCTAT
5'SS Class:
major
3'SS Sequence:
CTAAACTATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
AAGAACTAAACT
Flanking Amino Acid:
TRTSIQTQRVIYMAGGPHKS
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.2
69.8
37.2
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
62.7
0.29
1
59.3
41.4
Minor 5ss
43.6
-0.7
2.9
57.7
40.9
Minor BPS
49
0.01
1.9
65.64
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008578
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008958
16567769 - 16584092
16324