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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16569454_16571607_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16569454 - 16571607
Intron Length:
2154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
ATGTCAGTACTC
Flanking Amino Acid:
VEEAKSSPVHMYTASISPPS
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
68
0.45
1
57.8
39
Major PPT
81.5
0.71
0.7
80.5
24.8
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
43.2
-0.5
2.3
57.38
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008578
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008958
16567769 - 16584092
16324