About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16573870_16575073_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16573870 - 16575073
Intron Length:
1204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAA
U12 Branch Point Sequence:
CTTTCCTTGAAG
Flanking Amino Acid:
SAAMKVMSCESGPVLDHCDE
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
77.7
31.1
Major BPS
67.1
0.42
1
59
37.9
Major PPT
78.2
0.64
1
79.4
26.5
Minor 5ss
41.5
-0.9
2.7
54.2
42.9
Minor BPS
69.9
0.48
1.5
71.8
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008578
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008956
16571894 - 16595252
23359