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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16575148_16579672_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16575148 - 16579672
Intron Length:
4525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGTTT
5'SS Class:
major
3'SS Sequence:
TCCTTTAAATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CATCCTTTAAAT
Flanking Amino Acid:
KRCEEDNGSSVMPSNTPNVR
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
79.5
36.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
66.9
0.38
1
67.9
36.6
Minor 5ss
48.2
-0.2
3.2
73.2
43.7
Minor BPS
65.7
0.57
1.4
75.99
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008578
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008956
16571894 - 16595252
23359