Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16582967_16583289_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16582967 - 16583289

Intron Length:

323

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

ACTTTCCTTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGTTAAT

U12 Branch Point Sequence:

ATCTCCTGGACT

Flanking Amino Acid:

DPLTNQEVLQECINTGRSHL

Intron Amino Acid Position:

462

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.5

1.07

0.7

84.1

30.2

Major BPS

0.55

1.2

73.3

39.1

Major PPT

79.6

0.67

0.8

74.2

30.2

Minor 5ss

39.6

-1.2

2.8

49.9

46.3

Minor BPS

69.8

0.71

1.5

82.45

38.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008578

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008956

16571894 - 16595252

23359

ENSAPLT00000008958

16567769 - 16584092

16324