Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16583445_16583948_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16583445 - 16583948

Intron Length:

504

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTAAGTACA

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTTAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAA

U12 Branch Point Sequence:

TGATCTTAAAAC

Flanking Amino Acid:

GHQFVYMDTIAFYVIHGKIV

Intron Amino Acid Position:

514

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

76.2

32.6

Major BPS

77.8

0.69

78.2

31.8

Major PPT

88.4

0.86

0.9

94.6

18.5

Minor 5ss

37.9

-1.4

2.7

45.5

37.1

Minor BPS

55.1

0.14

1.8

65.24

40.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008578

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008956

16571894 - 16595252

23359

ENSAPLT00000008958

16567769 - 16584092

16324