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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16585568_16595004_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16585568 - 16595004
Intron Length:
9437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGAAGA
5'SS Class:
major
3'SS Sequence:
TTTTGCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TCTTTTTGCATT
Flanking Amino Acid:
VLLFTQFKNDRPVVTSTLLE
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
0.9
69.5
36.6
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
85.1
0.79
0.8
82.2
34.1
Minor 5ss
33.5
-1.9
2.8
40.2
45.5
Minor BPS
49.3
0.03
1.9
71.39
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008578
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008956
16571894 - 16595252
23359