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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16917497_16941811_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16917497 - 16941811
Intron Length:
24315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTACGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
LGWIAYPKNGWEEIGEVDEN
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.5
0.75
0.8
80.7
30.2
Minor 5ss
39.7
-1.2
3.1
51.1
45.2
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
EPHA5
Ensembl Gene ID:
ENSAPLG00000007060
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019989
16917263 - 17091277
174015
ENSAPLT00000042216
16902988 - 17092218
189231
ENSAPLT00000007467
16902988 - 17091277
188290
ENSAPLT00000038272
16917263 - 17092218
174956
ENSAPLT00000030642
16917263 - 17092218
174956
ENSAPLT00000024442
16917263 - 17092218
174956