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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16942476_17001276_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16942476 - 17001276
Intron Length:
58801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTCTTTTCACA
Flanking Amino Acid:
GYEEKNNTCQVCRPGFFKAS
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.9
31.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.1
0.83
0.7
82.8
25.8
Minor 5ss
33.8
-1.8
3.7
49.2
47.3
Minor BPS
54.9
0.15
1.8
67.58
39.4

Associated Gene:

Gene:
EPHA5
Ensembl Gene ID:
ENSAPLG00000007060
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038272
16917263 - 17092218
174956
ENSAPLT00000030642
16917263 - 17092218
174956
ENSAPLT00000019989
16917263 - 17091277
174015
ENSAPLT00000042216
16902988 - 17092218
189231