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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16942476_17038517_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16942476 - 17038517
Intron Length:
96042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAACCAT
U12 Branch Point Sequence:
TTCTCCTTGTCT
Flanking Amino Acid:
GYEEKNNTCQAPSPVSSVKK
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.9
31.6
Major BPS
57.8
0.19
1.3
67.1
39.2
Major PPT
82.5
0.73
0.8
76.3
32.3
Minor 5ss
33.8
-1.8
3.7
49.2
47.3
Minor BPS
52.3
0.15
3.5
87.07
39.1

Associated Gene:

Gene:
EPHA5
Ensembl Gene ID:
ENSAPLG00000007060
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024442
16917263 - 17092218
174956