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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_1699350_1701144_F

Intron Information:

Intron Rank:
126135
Intron Class:
major
Intron Phase:
Intron Coordinates:
1699350 - 1701144
Intron Length:
1795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTCACCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.8
38.1
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
79.2
0.66
0.8
77.7
31.1
Minor 5ss
36
-1.6
2.9
40.9
45.4
Minor BPS
48.5
-0
2.1
75.52
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017955
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035119
1697485 - 1701791
4307