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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17001433_17038517_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17001433 - 17038517
Intron Length:
37085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAACCAT
U12 Branch Point Sequence:
TTCTCCTTGTCT
Flanking Amino Acid:
ESDPPTMACTTPSPVSSVKK
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
75.5
40.6
Major BPS
57.8
0.19
1.3
67.1
39.2
Major PPT
82.5
0.73
0.8
76.3
32.3
Minor 5ss
44.7
-0.6
2.9
58.1
40.6
Minor BPS
52.3
0.15
3.5
87.07
39.1

Associated Gene:

Gene:
EPHA5
Ensembl Gene ID:
ENSAPLG00000007060
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030642
16917263 - 17092218
174956