About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17042267_17046312_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17042267 - 17046312
Intron Length:
4046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TTTCTCATCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTAACCTTAATC
Flanking Amino Acid:
RRFEFETSPVSVAASSDQSQ
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
68.3
42.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.5
0.75
0.7
81.8
28.5
Minor 5ss
38.8
-1.3
3
52.6
43.7
Minor BPS
78.2
0.87
1.2
80.34
34.1

Associated Gene:

Gene:
EPHA5
Ensembl Gene ID:
ENSAPLG00000007060
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019989
16917263 - 17091277
174015
ENSAPLT00000042216
16902988 - 17092218
189231
ENSAPLT00000007467
16902988 - 17091277
188290
ENSAPLT00000038272
16917263 - 17092218
174956
ENSAPLT00000030642
16917263 - 17092218
174956
ENSAPLT00000024442
16917263 - 17092218
174956