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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17062188_17063914_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17062188 - 17063914
Intron Length:
1727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTGTGTTCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
AATGCTGTAATT
Flanking Amino Acid:
EEKMHFHNGHIKLPGVRTYI
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
73.4
32.4
Major BPS
84.4
0.85
1
84
34.5
Major PPT
81.6
0.71
0.9
76.5
37.5
Minor 5ss
31.8
-2.1
2.7
38.8
40.3
Minor BPS
50.7
0.1
2.1
70.85
40.9

Associated Gene:

Gene:
EPHA5
Ensembl Gene ID:
ENSAPLG00000007060
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024442
16917263 - 17092218
174956
ENSAPLT00000019989
16917263 - 17091277
174015
ENSAPLT00000042216
16902988 - 17092218
189231
ENSAPLT00000007467
16902988 - 17091277
188290
ENSAPLT00000038272
16917263 - 17092218
174956
ENSAPLT00000030642
16917263 - 17092218
174956