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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17065364_17070909_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17065364 - 17070909
Intron Length:
5546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTACA
5'SS Class:
major
3'SS Sequence:
TTCTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
ATGATCTGATCT
Flanking Amino Acid:
IIHLEGVVTKSKPVMIVTEY
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
74.4
36
Major BPS
76.8
0.67
1
66
40.9
Major PPT
94.1
0.99
0.6
87.9
29.5
Minor 5ss
36.3
-1.5
3
43.1
38
Minor BPS
49.2
0.02
1.7
67.74
42.8

Associated Gene:

Gene:
EPHA5
Ensembl Gene ID:
ENSAPLG00000007060
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019989
16917263 - 17091277
174015
ENSAPLT00000042216
16902988 - 17092218
189231
ENSAPLT00000007467
16902988 - 17091277
188290
ENSAPLT00000038272
16917263 - 17092218
174956
ENSAPLT00000030642
16917263 - 17092218
174956
ENSAPLT00000024442
16917263 - 17092218
174956