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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17072000_17073862_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17072000 - 17073862
Intron Length:
1863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATCTATTTATTT
Flanking Amino Acid:
DDPEAAYTTRGGKIPIRWTA
Intron Amino Acid Position:
748

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
71.9
34.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.9
0.78
0.8
76.7
37.4
Minor 5ss
35.6
-1.6
2.8
36.8
40.4
Minor BPS
53
0.17
1.7
70.74
40.9

Associated Gene:

Gene:
EPHA5
Ensembl Gene ID:
ENSAPLG00000007060
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024442
16917263 - 17092218
174956
ENSAPLT00000019989
16917263 - 17091277
174015
ENSAPLT00000042216
16902988 - 17092218
189231
ENSAPLT00000007467
16902988 - 17091277
188290
ENSAPLT00000038272
16917263 - 17092218
174956
ENSAPLT00000030642
16917263 - 17092218
174956