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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17078991_17082038_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17078991 - 17082038
Intron Length:
3048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAAAT
5'SS Class:
major
3'SS Sequence:
CTTTTGTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TTTTGCTTCTCT
Flanking Amino Acid:
SLKTLVNASSRVSNLLVEHS
Intron Amino Acid Position:
862

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.2
36
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
86.9
0.83
0.7
84.7
30.2
Minor 5ss
33.4
-1.9
3.3
48.6
47.1
Minor BPS
43.6
-0.4
3.8
83.49
43.8

Associated Gene:

Gene:
EPHA5
Ensembl Gene ID:
ENSAPLG00000007060
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038272
16917263 - 17092218
174956
ENSAPLT00000007467
16902988 - 17091277
188290
ENSAPLT00000030642
16917263 - 17092218
174956
ENSAPLT00000024442
16917263 - 17092218
174956
ENSAPLT00000042216
16902988 - 17092218
189231
ENSAPLT00000019989
16917263 - 17091277
174015