About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17105485_17138696_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17105485 - 17138696
Intron Length:
33212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
TCTTTATTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTTTCTTTATTT
Flanking Amino Acid:
KQTSWIDPRDRLTKPLSFAD
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85.3
0.79
0.7
80.7
30.2
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
70.4
0.72
1.5
84.38
36.8

Associated Gene:

Gene:
WWC2
Ensembl Gene ID:
ENSAPLG00000002645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002721
17105354 - 17201367
96014