About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17163637_17164264_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17163637 - 17164264
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCCT
5'SS Class:
major
3'SS Sequence:
GTTTCCTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTTCCTGAACA
Flanking Amino Acid:
GEREKQDLMKSLAKLREKFS
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
69.9
40.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.2
0.45
1
66
39.7
Minor 5ss
43
-0.8
2.8
60.4
43.9
Minor BPS
79.7
0.93
1.3
85.68
32.9

Associated Gene:

Gene:
WWC2
Ensembl Gene ID:
ENSAPLG00000002645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048201
17136933 - 17201367
64435
ENSAPLT00000002721
17105354 - 17201367
96014