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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17165436_17169538_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17165436 - 17169538
Intron Length:
4103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGGG
5'SS Class:
major
3'SS Sequence:
TGTTTTATTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TATGTTTTATTT
Flanking Amino Acid:
LSLQYEEAKRSMANLKIELS
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
60.6
44.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83.5
0.75
0.8
82.4
34
Minor 5ss
28.7
-2.4
3.5
38.3
46.7
Minor BPS
54.8
0.23
1.6
71.82
40.2

Associated Gene:

Gene:
WWC2
Ensembl Gene ID:
ENSAPLG00000002645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002721
17105354 - 17201367
96014
ENSAPLT00000048201
17136933 - 17201367
64435