Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17169782_17174171_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17169782 - 17174171

Intron Length:

4390

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGGGT

5'SS Class:

strong_major

3'SS Sequence:

CCTCTGTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTTAC

U12 Branch Point Sequence:

CTTTCCTCTACT

Flanking Amino Acid:

KSTPSQALAERLKLEERRKE

Intron Amino Acid Position:

399

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.9

76.9

38.6

Major BPS

73.7

0.59

0.9

63.6

35.1

Major PPT

80.7

0.69

0.8

71.9

Minor 5ss

30.9

-2.2

3.6

46.8

48.5

Minor BPS

65.4

0.56

1.9

84.68

41.8

Associated Gene:

Gene:

WWC2

Ensembl Gene ID:

ENSAPLG00000002645

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048201

17136933 - 17201367

64435

ENSAPLT00000002721

17105354 - 17201367

96014