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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17188543_17190466_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17188543 - 17190466
Intron Length:
1924

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTGATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTCTTTTGATA
Flanking Amino Acid:
SQQAAVILTLVDKETNTEEP
Intron Amino Acid Position:
955

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
83.1
28.6
Major BPS
78.6
0.71
1
78.6
31
Major PPT
81.3
0.7
0.9
80.1
32
Minor 5ss
35
-1.7
2.8
42.6
38.5
Minor BPS
66.8
0.52
1.1
74.7
30

Associated Gene:

Gene:
WWC2
Ensembl Gene ID:
ENSAPLG00000002645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048201
17136933 - 17201367
64435
ENSAPLT00000002721
17105354 - 17201367
96014