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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17204123_17206659_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
17204123 - 17206659
Intron Length:
2537

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCCTTAAAA
5'SS Class:
major
3'SS Sequence:
AATGAATGTAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTTATTTAATG
Flanking Amino Acid:
DQCQHLETETRTNLSV*
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.3
53.3
39.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
49.4
-0
1.2
45.6
44.2
Minor 5ss
24
-3
3.6
31.7
42.2
Minor BPS
65.6
0.35
1.5
67.74
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000894
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000873
17204104 - 17207306
3203