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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17249783_17250631_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17249783 - 17250631
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGAAA
5'SS Class:
major
3'SS Sequence:
CTTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
ACGCACTTACTT
Flanking Amino Acid:
PHHERRTGCQEGVEEPSKKR
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
0.9
73.3
32.3
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
88.9
0.88
0.7
84
31
Minor 5ss
25.5
-2.8
3
29.9
43.2
Minor BPS
47.6
-0.1
1.8
60.46
43.4

Associated Gene:

Gene:
CDKN2AIP
Ensembl Gene ID:
ENSAPLG00000016955
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029422
17249318 - 17252856
3539