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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17273148_17273780_R

Intron Information:

Intron Rank:
136984
Intron Class:
major
Intron Phase:
Intron Coordinates:
17273148 - 17273780
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TCACTGTGTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GATCTCATAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
71.2
0.48
1
68.7
41.8
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
57.8
0.22
1.6
67.05
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021189
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017961
17272871 - 17276576
3706