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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17301066_17301230_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17301066 - 17301230
Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGG
5'SS Class:
major
3'SS Sequence:
TATGTACATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TTTCTATGTACA
Flanking Amino Acid:
RGWNWVDVIKHVSIFKLSFN
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
63.2
43.6
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
69.8
0.45
1
60.1
45.1
Minor 5ss
36.2
-1.6
3.2
47.4
48
Minor BPS
47
-0.2
2
66.75
38.7

Associated Gene:

Gene:
RWDD4
Ensembl Gene ID:
ENSAPLG00000002484
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002511
17300672 - 17305394
4723