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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17302372_17303188_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17302372 - 17303188
Intron Length:
817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCGTCCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
AAAACACTAACA
Flanking Amino Acid:
FMENQPVNTVTSVSNSIAIG
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
75.7
0.58
0.8
73.2
31.7
Minor 5ss
29.8
-2.3
2.6
30.2
36.8
Minor BPS
47.6
-0.1
1.9
59.64
38.7

Associated Gene:

Gene:
RWDD4
Ensembl Gene ID:
ENSAPLG00000002484
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002511
17300672 - 17305394
4723