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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17303554_17305144_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17303554 - 17305144
Intron Length:
1591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGCGG
5'SS Class:
major
3'SS Sequence:
TTTTCGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GATTTCTGATTT
Flanking Amino Acid:
ELSPVSFQYRIGENGDPKAF
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
55.2
49
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
87.7
0.85
0.7
85.1
29.7
Minor 5ss
29.7
-2.3
3.2
30.3
42.8
Minor BPS
53
0.17
1.7
70.58
40.4

Associated Gene:

Gene:
RWDD4
Ensembl Gene ID:
ENSAPLG00000002484
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002511
17300672 - 17305394
4723