Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17306027_17306137_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17306027 - 17306137

Intron Length:

111

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGACGG

5'SS Class:

major

3'SS Sequence:

TCGGTGCTTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAC

U12 Branch Point Sequence:

CTCGCTCTGACC

Flanking Amino Acid:

DHEYPKCRTKRTSYEWYIPK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.1

53.4

45.5

Major BPS

69.1

0.47

60.7

37.6

Major PPT

71.8

0.49

61.5

44.5

Minor 5ss

24.5

-2.9

3.1

29.7

43.1

Minor BPS

47.9

-0.1

1.8

57.63

Associated Gene:

Gene:

TRAPPC11

Ensembl Gene ID:

ENSAPLG00000015916

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032367

17305795 - 17329912

24118

ENSAPLT00000016682

17305795 - 17328102

22308