Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17310651_17310859_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17310651 - 17310859

Intron Length:

209

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGACTT

5'SS Class:

strong_major

3'SS Sequence:

TGTTTATACCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

TATGTATTAACT

Flanking Amino Acid:

ELKQDTQNALKNYRTAYNLV

Intron Amino Acid Position:

245

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

78.3

36.2

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

70.2

0.45

0.9

63.4

42.3

Minor 5ss

39.6

-1.2

3.3

57.8

40.6

Minor BPS

65.3

0.56

1.7

82.01

39.1

Associated Gene:

Gene:

TRAPPC11

Ensembl Gene ID:

ENSAPLG00000015916

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032367

17305795 - 17329912

24118

ENSAPLT00000016682

17305795 - 17328102

22308