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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17313015_17314372_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17313015 - 17314372
Intron Length:
1358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTTTC
5'SS Class:
major
3'SS Sequence:
CTGTCTTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GGATTTTTCACT
Flanking Amino Acid:
GQRPWRQGTLSFDLSDPEKE
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77.7
31.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.9
0.63
0.9
73.2
36.2
Minor 5ss
59
0.3
2.2
70
34.4
Minor BPS
54.4
0.22
1.7
69.7
41.2

Associated Gene:

Gene:
TRAPPC11
Ensembl Gene ID:
ENSAPLG00000015916
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032367
17305795 - 17329912
24118
ENSAPLT00000016682
17305795 - 17328102
22308