About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17322808_17323256_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17322808 - 17323256
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTCCTTTATCT
Flanking Amino Acid:
PIGDLQPGEKIEKPIYIRCG
Intron Amino Acid Position:
837

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
74.4
33.9
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
86.5
0.82
0.8
80.9
30.7
Minor 5ss
33.1
-1.9
3.4
48.8
46.8
Minor BPS
72.7
0.79
1.5
89.39
35

Associated Gene:

Gene:
TRAPPC11
Ensembl Gene ID:
ENSAPLG00000015916
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032367
17305795 - 17329912
24118
ENSAPLT00000016682
17305795 - 17328102
22308