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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17323377_17323740_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17323377 - 17323740
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
ATTACCTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTTCATTACCT
Flanking Amino Acid:
GKEILCKCHRDETVTIETVF
Intron Amino Acid Position:
877

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
73.9
32.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.2
0.52
1
66.2
39.2
Minor 5ss
36.8
-1.5
3
39
46.2
Minor BPS
65
0.55
1.9
84.99
41.5

Associated Gene:

Gene:
TRAPPC11
Ensembl Gene ID:
ENSAPLG00000015916
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032367
17305795 - 17329912
24118