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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17323377_17323887_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17323377 - 17323887
Intron Length:
511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTCGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGAAAT
U12 Branch Point Sequence:
TCTGTCTCGACA
Flanking Amino Acid:
GKEILCKCHRLEHLDRVFVD
Intron Amino Acid Position:
877

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
73.9
32.9
Major BPS
59.4
0.23
1.2
65.3
38.6
Major PPT
72.9
0.52
1
68.7
37.3
Minor 5ss
36.8
-1.5
3
39
46.2
Minor BPS
54
0.12
1.7
65.73
41.2

Associated Gene:

Gene:
TRAPPC11
Ensembl Gene ID:
ENSAPLG00000015916
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016682
17305795 - 17328102
22308