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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17496295_17498838_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17496295 - 17498838
Intron Length:
2544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
ATGGTACTAACG
Flanking Amino Acid:
VAEKGWFIAESRDKLPFWEN
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
80.8
0.69
0.9
72.8
42.2
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
44.4
-0.5
2
51.12
43.1

Associated Gene:

Gene:
ENPP6
Ensembl Gene ID:
ENSAPLG00000015694
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028817
17495016 - 17532584
37569
ENSAPLT00000016369
17495016 - 17523023
28008