About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_1749758_1755664_F

Intron Information:

Intron Rank:
131915
Intron Class:
major
Intron Phase:
Intron Coordinates:
1749758 - 1755664
Intron Length:
5907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGATG
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTTTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.1
40.7
Major BPS
100
1.24
0.5
100
0
Major PPT
86.2
0.81
0.8
80.7
30.8
Minor 5ss
42
-0.9
3.1
56.4
48
Minor BPS
50.1
0.08
1.8
70.88
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020810
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044326
1749533 - 1763915
14383