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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17554253_17555605_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17554253 - 17555605
Intron Length:
1353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTTTCCTCATTC
Flanking Amino Acid:
SVPSDEENAEGRLHWQKKNI
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
81.2
0.7
0.7
76.8
25.2
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
58
0.23
1.8
70.35
41.6

Associated Gene:

Gene:
IRF2
Ensembl Gene ID:
ENSAPLG00000015442
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040296
17553519 - 17591561
38043
ENSAPLT00000023144
17553903 - 17579578
25676
ENSAPLT00000016098
17553941 - 17577940
24000