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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17555653_17560168_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17555653 - 17560168
Intron Length:
4516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTGTTTGACA
Flanking Amino Acid:
LQISPVSSYAESETTDSVPS
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
82.7
0.74
1
79.9
37.7
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
69.2
0.6
1.7
81.99
33.2

Associated Gene:

Gene:
IRF2
Ensembl Gene ID:
ENSAPLG00000015442
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040296
17553519 - 17591561
38043
ENSAPLT00000023144
17553903 - 17579578
25676
ENSAPLT00000016098
17553941 - 17577940
24000