Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17567963_17570436_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17567963 - 17570436

Intron Length:

2474

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGAGGAA

5'SS Class:

major

3'SS Sequence:

TCTGTTGTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTTAA

U12 Branch Point Sequence:

AGAACTTTAAGA

Flanking Amino Acid:

LPLSERPSKKGKKTKSEKDD

Intron Amino Acid Position:

122

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.7

0.49

1.1

62.6

37.9

Major BPS

65.9

0.4

57.6

Major PPT

81.8

0.72

0.9

76.3

37.7

Minor 5ss

26.5

-2.7

3.7

36.6

47.9

Minor BPS

53.8

0.12

1.7

60.24

39.4

Associated Gene:

Gene:

IRF2

Ensembl Gene ID:

ENSAPLG00000015442

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040296

17553519 - 17591561

38043

ENSAPLT00000023144

17553903 - 17579578

25676

ENSAPLT00000016098

17553941 - 17577940

24000