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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17571336_17576759_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17571336 - 17576759
Intron Length:
5424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATCAAT
U12 Branch Point Sequence:
CAATCAATATCG
Flanking Amino Acid:
TIPGLKWINKEKKIFQIPWM
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
60.3
0.26
1.2
68.8
34.5
Major PPT
89.5
0.89
0.6
81.6
30.4
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
42.9
-0.6
2.1
47.95
44.5

Associated Gene:

Gene:
IRF2
Ensembl Gene ID:
ENSAPLG00000015442
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040296
17553519 - 17591561
38043
ENSAPLT00000023144
17553903 - 17579578
25676
ENSAPLT00000016098
17553941 - 17577940
24000