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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17617182_17619058_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17617182 - 17619058
Intron Length:
1877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTTTCTTCCAAG
Flanking Amino Acid:
CRDIIKVLKNVSEEDHSKRS
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
84.6
0.86
1
74
41.2
Major PPT
75.7
0.58
1
75
33.7
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
48.7
-0.2
2.1
64.71
43.2

Associated Gene:

Gene:
CASP3
Ensembl Gene ID:
ENSAPLG00000015194
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030716
17615301 - 17620691
5391