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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17618825_17619058_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17618825 - 17619058
Intron Length:
234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCGTCTTCTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
CGTCTTCTAAAG
Flanking Amino Acid:
CRDIIKVLKNEGWKNMLQLK
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
70.3
0.46
1
70.8
33.9
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
44.4
-0.5
1.7
47.04
39.7

Associated Gene:

Gene:
CASP3
Ensembl Gene ID:
ENSAPLG00000015194
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015852
17615301 - 17621278
5978