Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17619824_17621204_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17619824 - 17621204

Intron Length:

1381

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

GATTTGTGTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTAAA

U12 Branch Point Sequence:

TAACACTTAAAG

Flanking Amino Acid:

ADAKSFPGSKGMNLPASKSM

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

72.3

39.5

Major BPS

0.47

69.9

32.6

Major PPT

71.5

0.48

1.1

64.7

45.5

Minor 5ss

31.6

-2.1

3.1

31.9

42.5

Minor BPS

53.3

-0

1.7

58.19

42.1

Associated Gene:

Gene:

CASP3

Ensembl Gene ID:

ENSAPLG00000015194

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015852

17615301 - 17621278

5978