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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17632217_17633132_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17632217 - 17633132
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
GAGGTCATAATT
Flanking Amino Acid:
TTYKELWFYYIQGYKTSLMH
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
81.8
0.71
0.7
81.5
30.5
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
48.8
-0
1.7
62.22
42

Associated Gene:

Gene:
PRIMPOL
Ensembl Gene ID:
ENSAPLG00000015061
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037978
17631655 - 17642948
11294
ENSAPLT00000015714
17630960 - 17642948
11989
ENSAPLT00000046298
17630965 - 17640847
9883