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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17633275_17634683_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17633275 - 17634683
Intron Length:
1409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATGG
5'SS Class:
major
3'SS Sequence:
ATATAATTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
GTTTATATAATT
Flanking Amino Acid:
GKSMVAKLIELVSQKLKELY
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.9
Major BPS
79
0.72
1
78.4
31.2
Major PPT
75.3
0.57
1
71
43.4
Minor 5ss
36.7
-1.5
3.1
47.6
47.9
Minor BPS
58.1
0.33
1.8
78.75
37.3

Associated Gene:

Gene:
PRIMPOL
Ensembl Gene ID:
ENSAPLG00000015061
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046298
17630965 - 17640847
9883
ENSAPLT00000037978
17631655 - 17642948
11294
ENSAPLT00000015714
17630960 - 17642948
11989