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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17643597_17644111_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17643597 - 17644111
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTAACAACAACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTCCTTAACA
Flanking Amino Acid:
REENPREKVVYGTSSLPALL
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
59.9
0.22
1
53.1
40.3
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
92.9
1.34
0.7
94.2
22.5

Associated Gene:

Gene:
CENPU
Ensembl Gene ID:
ENSAPLG00000014915
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015557
17643291 - 17654678
11388