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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17644269_17645610_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17644269 - 17645610
Intron Length:
1342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGATCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TAGTCATCAAAG
Flanking Amino Acid:
RLMQVREELIGAESQLVELQ
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.9
36.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
83.3
0.75
0.9
80.9
36.4
Minor 5ss
51.5
0.05
2.3
61.4
43.6
Minor BPS
48
-0.2
2
55.95
44.5

Associated Gene:

Gene:
CENPU
Ensembl Gene ID:
ENSAPLG00000014915
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015557
17643291 - 17654678
11388