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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17648076_17648477_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17648076 - 17648477
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
CTGACTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TATCCCCTGACT
Flanking Amino Acid:
GEFEKITSNYRQSIESGICR
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
75.6
0.58
0.9
69.3
36.7
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
65.6
0.57
1.7
83.21
37.1

Associated Gene:

Gene:
CENPU
Ensembl Gene ID:
ENSAPLG00000014915
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015557
17643291 - 17654678
11388