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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17662340_17663008_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17662340 - 17663008
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCATT
5'SS Class:
strong_major
3'SS Sequence:
AATTTCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AACCCTTCAAAT
Flanking Amino Acid:
QVFVHGESLQAFLIAVVVPD
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
81.8
38.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
74.9
0.56
0.9
71.9
38.2
Minor 5ss
43.9
-0.7
3.2
65.5
45.8
Minor BPS
49.1
0.01
1.6
62.91
40.7

Associated Gene:

Gene:
ACSL1
Ensembl Gene ID:
ENSAPLG00000010847
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011470
17661759 - 17689179
27421