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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_17666610_17667607_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17666610 - 17667607
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
TTGGTTTTACTT
Flanking Amino Acid:
TFLRTALGCQFYEGYGQTEC
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
80.6
0.69
0.8
73.8
36.4
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
52.8
0.17
1.7
70.08
42.4

Associated Gene:

Gene:
ACSL1
Ensembl Gene ID:
ENSAPLG00000010847
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011470
17661759 - 17689179
27421